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ABOUT THIS RECORD

ID: MNEST004197
species: Oryza sativa
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AATGTGGGGAATGCTAGAATG

miRNA*
 TTCTTGCATTTCTCACATTCA

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TATGTCTTATGTAGTACTTCCTCCGTTTCATAATGTAAGTCATTCTTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTCTA
GATTCATCAACATCAATATGAATGTGGGGAATGCTAGAATGACTTACGTTGTGAAAAAGAGGGAGTAGCAACCAATTCAT

dot-bracket secondary structure
.........(((..(((((((((..(((((((((((((((((((((.(((((((((((((((((((((((((.(((((((((((((........))))))
))))))).)).))))))))))))))))))))))).)))))))))))))))))))))..))))))))))))..........


SIMILARITIES
miRBase osa-MIR809d: 3e-55

PMRD osa-miR809d: 3e-55

microPC miR809: 2e-22		UniProt no hits

RFAM MIR1122: 1e-51		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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