ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATGTGGGAAATGCTAGAATG miRNA* TTCTATTATTTCACACATTTA mismatches: 2 bulges: 0 |
pre-miRNA
GTCATTCTATTATTTCACACATTTATATTGATGTTAATAAATCTAGACATATATATCTATCTAGATTCATTAACATTAATATGAATGTGGGAAATGCTAG
AATGACTTACACTG
dot-bracket secondary structure
(((((((((.((((((.(((((((((((((((((((((.((((((((............)))))))).))))))))))))))))))))).)))))).)))
))))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTCATTCTATTATTTCACACATTTATATTGATGTTAATAAATCTAGACATATATATCTATCTAGATTCATTAACATTAATATGAATGTGGGAAATGCTAG
AATGACTTACACTG
dot-bracket secondary structure
(((((((((.((((((.(((((((((((((((((((((.((((((((............)))))))).))))))))))))))))))))).)))))).)))
))))))........
SIMILARITIES| miRBase osa-MIR808: 5e-40 PMRD osa-miR808: 5e-40 microPC miR809: 1e-34 | UniProt no hits RFAM MIR1122: 6e-43 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
