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ABOUT THIS RECORD
ID:
MNEST004202
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AATGACTTACATTGTGAAATA
miRNA*
TTTCGCAATATAAGTTATTCT
mismatches:
2
bulges:
0
View larger
pre-miRNA
GTACTAACAGATACTTCCTTCA
TTTCGCAATATAAGTTATTCT
AGCATTTTTCACGTTCATATTGATGTTAATGAATCTAGATAGATGTATATGTCTAGA
TTCATTAACATCAATACGAATGTGGGAAATGCTAG
AATGACTTACATTGTGAAATA
GAGAAAGTAGATTAGAATA
dot-bracket secondary structure
...((((....(((((.(((.(
(((((((((.(((((((((((
((((((((((((((((.((((((((((((((((((((((((........))))))))
)))))))))))))))).))))))))))))))))))
))))))))).)))))))))).
))).)))))..))))....
SIMILARITIES
miRBase
osa-MIR808
:
4e-51
PMRD
osa-miR808
:
4e-51
microPC
miR809
:
7e-28
UniProt
no hits
RFAM
MIR1122: 2e-47
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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