ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGGGACGGAGGGAGTACT miRNA* TACTCCCTCCGTCCCAAAAAC mismatches: 2 bulges: 0 |
pre-miRNA
AATTTTCCAAATAATAGGTACAGGGGGAGATACTCCCTCCGTCCCAAAAACACATACATCAACCTGGAGATCAACCTAGGAGAGATCACATCCCCTCTTA
ATTCTTATCCCCTCTTAATTCTTTTTGGGACGGAGGGAGTACTGTTGAAGAAGTCCGATGACATTTTTTC
dot-bracket secondary structure
..((((((...((.....))...)))))).((((((((((((((((((((...............(((........((((((.(((...)))..))))))
.......)))...........)))))))))))))))))))).....(((((.(((....))).)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AATTTTCCAAATAATAGGTACAGGGGGAGATACTCCCTCCGTCCCAAAAACACATACATCAACCTGGAGATCAACCTAGGAGAGATCACATCCCCTCTTA
ATTCTTATCCCCTCTTAATTCTTTTTGGGACGGAGGGAGTACTGTTGAAGAAGTCCGATGACATTTTTTC
dot-bracket secondary structure
..((((((...((.....))...)))))).((((((((((((((((((((...............(((........((((((.(((...)))..))))))
.......)))...........)))))))))))))))))))).....(((((.(((....))).)))))..
SIMILARITIES| miRBase tae-MIR1122: 0.0001 PMRD osa-miRf11019-akr: 0.000009 microPC miR1439: 2e-59 | UniProt no hits RFAM MIR1122: 0.0000006 | most similar mature miRNAs |
Identical with: miR1439 from microPC (MNEST046324) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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