ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf75
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCGAGACGAATCTTTTGAGA miRNA* TTCAAAGATTCGTCTCGCGAT mismatches: 2 bulges: 0 |
pre-miRNA
TTTCAGAACTCGCCTGAAAACTGCGAGACGAATCTTTTGAGACTAATTAAGCCATCATTAGCACATGTGGGTTACGGTAGTACTTATGGCTAATCACGGA
CTAATTAGGCTTCAAAGATTCGTCTCGCGATTTCCTCCATAACTGTGCA
dot-bracket secondary structure
((((((.......))))))..((((((((((((((((.(((.(((((((..((...((((((.((((..(((.((....)))))))))))))))...)).
.))))))).))).))))))))))))))))....................
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTCAGAACTCGCCTGAAAACTGCGAGACGAATCTTTTGAGACTAATTAAGCCATCATTAGCACATGTGGGTTACGGTAGTACTTATGGCTAATCACGGA
CTAATTAGGCTTCAAAGATTCGTCTCGCGATTTCCTCCATAACTGTGCA
dot-bracket secondary structure
((((((.......))))))..((((((((((((((((.(((.(((((((..((...((((((.((((..(((.((....)))))))))))))))...)).
.))))))).))).))))))))))))))))....................
SIMILARITIES| miRBase osa-MIR2124a: 0.000002 PMRD osa-miRf11785-akr: 7e-34 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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