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ABOUT THIS RECORD
ID:
MNEST004337
species:
Oryza sativa
miRNA family:
MIRf10
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATTCGTCTCGCGGTTTACAGG
miRNA*
TGTAAATTGTGAGACGAATCT
mismatches:
1
bulges:
0
View larger
pre-miRNA
GTGAACGAAAAAAATCAATTGCACAGTTTGCA
TGTAAATTGTGAGACGAATCT
TTTGAGCCTAATTACGCCATGATTTTACAATATGATGCTACAGTAAA
CATTTGCTAATGATGGATTAATTAGGCTTAATAA
ATTCGTCTCGCGGTTTACAGG
CATAATCTGTAATTTGTTTTATTATTAGT
dot-bracket secondary structure
.......((.(((((.(((((((.....(((.
(((((((((((((((((((..
.(((((((((((((..((((.(((...(((.(((.(((....)))..
))))))..))).))))..)))))))))))))...
))))))))))))))))))).)
)).....))))))).))))).))......
SIMILARITIES
miRBase
osa-MIR2124a
:
4e-57
PMRD
osa-miR442
:
6e-47
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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