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ABOUT THIS RECORD
ID:
MNEST004340
species:
Oryza sativa
miRNA family:
MIRf75
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CGCGAGACGAATATTTTGAGC
miRNA*
TTAATAAATTCGTCTCGCGGT
mismatches:
3
bulges:
0
View larger
pre-miRNA
TATTAAATATAGATAAAATGAAAAACTAATTGCACATTTTGCTTGGAAAT
CGCGAGACGAATATTTTGAGC
CTAATTAGTCCATGATTAGCCATAAGTGC
TATAGTAACCCACATGTGCTAATGACAGATTAATTAGGC
TTAATAAATTCGTCTCGCGGT
TTCCAAGCGAGTTATGAAATTAGTTTTTTCATTCATGTCC
CAAAACC
dot-bracket secondary structure
...........((((.(((((((((((((((.((...(((((((((((((
((((((((((((...((((((
((((((((((....((((((.(((.(((.
..........))).)))))))))....))))))))))))
))))...))))))))))))))
)))))))))))...)).)))))).)))))))))..)))).
.......
SIMILARITIES
miRBase
osa-MIR2124a
:
2e-16
PMRD
osa-miRf11785-akr
:
1e-36
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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