ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf529
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCTAAGACAACGAATCTGGA miRNA* CAGATTCGTCATTTCAGGATA mismatches: 4 bulges: 0 |
pre-miRNA
GAGCGTTTTGCACAAGATGTTGTACTTCCTCCCTCTTAAAAAGAATCAACCTAGGATAGAACGTGACTTATTCCTAAGACAACGAATCTGGACAATGTGA
CCCATCCAGATTCGTCATTTCAGGATAGGTCACATTCTATCCAAGATTAATTCTTTCTTGGACGGAGAGAGTATGCTGTTTTGATTTTGTGAACC
dot-bracket secondary structure
..((.....)).(((((((.(((((((.((((.(((...(((((((.((.((.((((((((.(((((((((.(((.(((..(((((((((((........
....)))))))))))..))).)))))))))))).)))))))).)).)).)))))))...))).)))).))))))).)))))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGCGTTTTGCACAAGATGTTGTACTTCCTCCCTCTTAAAAAGAATCAACCTAGGATAGAACGTGACTTATTCCTAAGACAACGAATCTGGACAATGTGA
CCCATCCAGATTCGTCATTTCAGGATAGGTCACATTCTATCCAAGATTAATTCTTTCTTGGACGGAGAGAGTATGCTGTTTTGATTTTGTGAACC
dot-bracket secondary structure
..((.....)).(((((((.(((((((.((((.(((...(((((((.((.((.((((((((.(((((((((.(((.(((..(((((((((((........
....)))))))))))..))).)))))))))))).)))))))).)).)).)))))))...))).)))).))))))).)))))))............
SIMILARITIES| miRBase no hits PMRD osa-miRf10180-akr: 0.00001 microPC no hits | UniProt no hits RFAM MIR1122: 0.00005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
