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ABOUT THIS RECORD
ID:
MNEST004362
species:
Oryza sativa
miRNA family:
MIRf162
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTCCGTGTCCAACTTTGATT
miRNA*
TCAAACGTTGGACACGGAAACC
mismatches:
0
bulges:
1
View larger
pre-miRNA
TGGTCAGATTATTAGCGGTCTACTCGCTCCGTCCCAAAAAAAGACAAACCCTGGG
TTTCCGTGTCCAACTTTGATT
GTCCGTCTTATATGAATTTTTTTT
ATAATTCGTATTTTCATTGTTGTTAGATGATAAAACATGATTAATATTTTATGCGTGACTTGTCTTTTTAATTTTTTTTTCATAATTTTTTCAAATAAGA
CGGACGG
TCAAACGTTGGACACGGAAACC
AGAGTTTGTCTTTTTTTTGGACGGAGGGAGCATGCAGATGAAATTGAATAT
dot-bracket secondary structure
...((((.(((((.(((.....(((.((((((((.((((((((((((((.((((.
(((((((((((((((((((((
(((((((((((.((((........
..((((.((.((.(((((.......))))).)).)).(((..((....(((.....((....))....)))....))..))).))))..)))).))))))
)))))))
))))).))))))))))))))))
)).)))))))))))))).)))))))).)))..))).)))))..))))....
SIMILARITIES
miRBase
osa-MIR812j
:
0.00000000000006
PMRD
osa-miRf10815-akr
:
2e-35
microPC
miR812
:
2e-38
UniProt
no hits
RFAM
MIR806: 4e-40
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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