ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GGTCATGCTGTAGTTTCATC mismatches: 0 bulges: 1 |
pre-miRNA
CCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGATGATGATGATCCACCTCTCTCATCTGTGTTCTTGATTAATTACGGATCAATCGATCAGGTCATG
CTGTAGTTTCATCTGCTGGTT
dot-bracket secondary structure
..((.(((.(((((((((((.(((((((((((((((((..(((((..........)))))..)))).((((((.......))))))...)))))))))))
))))))))))))).))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
CCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGATGATGATGATCCACCTCTCTCATCTGTGTTCTTGATTAATTACGGATCAATCGATCAGGTCATG
CTGTAGTTTCATCTGCTGGTT
dot-bracket secondary structure
..((.(((.(((((((((((.(((((((((((((((((..(((((..........)))))..)))).((((((.......))))))...)))))))))))
))))))))))))).))).)).
SIMILARITIES| miRBase osa-MIR167h: 6e-37 PMRD osa-miR167h: 6e-37 microPC miR167: 5e-31 | UniProt no hits RFAM MIR167_1: 1e-35 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
