ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf1548
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTTCATCTGCTTGTGG miRNA* ATTAGGAGCTGAAGCTGCCAG mismatches: 4 bulges: 0 |
pre-miRNA
CTTGATTGTTGAGGTGCAACCATTAGGAGCTGAAGCTGCCAGCATGATCTGATGAGTGCTTATTAGGTGAGGGCAGAATTGACTGCCAAAACAAAGATCA
GATCATGCTGTGCAGTTTCATCTGCTTGTGGCTGCACAAAATTAAAGGG
dot-bracket secondary structure
.((((((......(((((.((((.((.((.(((((((((((((((((((((((.....(((.....((...(((((......)))))...)).)))))))
)))))))))).))))))))).)).)).)))).)))))..))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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CTTGATTGTTGAGGTGCAACCATTAGGAGCTGAAGCTGCCAGCATGATCTGATGAGTGCTTATTAGGTGAGGGCAGAATTGACTGCCAAAACAAAGATCA
GATCATGCTGTGCAGTTTCATCTGCTTGTGGCTGCACAAAATTAAAGGG
dot-bracket secondary structure
.((((((......(((((.((((.((.((.(((((((((((((((((((((((.....(((.....((...(((((......)))))...)).)))))))
)))))))))).))))))))).)).)).)))).)))))..))))))....
SIMILARITIES| miRBase osa-MIR167d: 9e-58 PMRD osa-miRf11209-akr: 4e-66 microPC miR167: 0.0000005 | UniProt no hits RFAM MIR167_1: 2e-59 | most similar mature miRNAs |
Identical with: osa-miR167n from PMRD (MNEST048870) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
