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ABOUT THIS RECORD

ID: MNEST004368
species: Oryza sativa
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTG

miRNA*
 GATCATGCTGTGCAGTTTCATC

mismatches: 0
bulges: 1
View larger
pre-miRNA
 CCTTGATTGTTGAGGTGCAACCATTAGGAGCTGAAGCTGCCAGCATGATCTGATGAGTGCTTATTAGGTGAGGGCAGAATTGACTGCCAAAACAAAGATC
AGATCATGCTGTGCAGTTTCATCTGCTTGTGGCTGCACAAAATTAAAGGGC

dot-bracket secondary structure
((((....(((...(((((.((((.((.((.(((((((((((((((((((((((.....(((.....((...(((((......)))))...)).))))))
))))))))))).))))))))).)).)).)))).)))))..)))..))))..


SIMILARITIES
miRBase osa-MIR167d: 9e-58

PMRD osa-miRf11209-akr: 4e-66

microPC miR167: 0.0000005		UniProt no hits

RFAM MIR167_1: 2e-59		most similar mature miRNAs

Identical with: osa-miR167n from PMRD (MNEST048870)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence




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