ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATCCGGCAGCTTCATC mismatches: 2 bulges: 1 |
pre-miRNA
TGTTTGTGCGCCATAAGCAGGTGAAGCTGCCAGCATGATCTGAAAGCATCTCAAACCAGCGATCAGATCATCCGGCAGCTTCATCTTCTCATGGCAGCAC
ACC
dot-bracket secondary structure
....((((((((((.((.(((((((((((((...(((((((((..((...........))..)))))))))..))))))))))))).)).))))).))))
)..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
TGTTTGTGCGCCATAAGCAGGTGAAGCTGCCAGCATGATCTGAAAGCATCTCAAACCAGCGATCAGATCATCCGGCAGCTTCATCTTCTCATGGCAGCAC
ACC
dot-bracket secondary structure
....((((((((((.((.(((((((((((((...(((((((((..((...........))..)))))))))..))))))))))))).)).))))).))))
)..
SIMILARITIES| miRBase osa-MIR167g: 3e-41 PMRD osa-miRf10478-akr: 3e-50 microPC miR167: 3e-29 | UniProt no hits RFAM MIR167_1: 6e-43 | most similar mature miRNAs |
Identical with: miR167 from microPC (MNEST045345) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
