miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST004377
species: Oryza sativa
miRNA family: MIR2123
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAAAAAGTCAACGGCGTCAAA

miRNA*
TGACACCGTTGACTTTTTAGC

mismatches: 1
bulges: 0

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pre-miRNA
AAAGGCTTATACTCCCTTCGAATTCGAAATATTTGACACCGTTGACTTTTTAGCACATGTTTGACTGTTCGTCTTATTCAAAAACTTTTATGAAATATGT
AAAATTATATGCCTACATGAAAATATATTTAACAATGAATCAAATGATAGGAAAAGAATTATTAAGTGTCAAAATTTTTTGAATAAGACGAACGGTCAAA
CATGTAATAAAAAGTCAACGGCGTCAAACATTCCGAAACGGAGGGAGTATGTAGGAGC


dot-bracket secondary structure
....((((((((((((((((..((((.(((.((((((.((((((((((((((..((((((((((((((((((((((((((((((.(((..(((.((.((.
..((((.....(((((((.........................))).)))).....))))..)).)).)))))).)))))))))))))))))))))))))
)))))..)))))))))))))).)))))).))).)))).))))))))))))....))))



SIMILARITIES
miRBase osa-MIR806f: 6e-128

PMRD osa-miR806f: 6e-128

microPC miR806: 4e-64
UniProt no hits

RFAM MIR806: 2e-88
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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