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ABOUT THIS RECORD
ID:
MNEST004386
species:
Oryza sativa
miRNA family:
MIR2123
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAAAAAGTCAACGGTGTCAAA
miRNA*
TGACACCGTTGACTTCTTATA
mismatches:
1
bulges:
0
View larger
pre-miRNA
TTAATTACTCTCTCCATTTCAAAATGTT
TGACACCGTTGACTTCTTATA
ACAAGTTTGACCGTTTATCTTATTAAAAAAATTTATGAAATATGTAANACT
ATATATGTACATAAAAGTATATTTAACCATAAATCAAATAATATGAAAAAAAAATAATTACATAGATTTTTGGAATAAGACGAATGGTCAAACACGTCC
T
AAAAAGTCAACGGTGTCAAA
TATTTTAAAACGGAGGGAGTACTACATAA
dot-bracket secondary structure
.....((((((((((.(((.((((((((
(((((((((((((((.(((..
((..((((((((((((.(((((((..(((((((((((...((((((.....
.......)))))).((.(((.(((...((((..........))))....))).))).)).)))))))))))..))))))).))))))))))))..))..
)
)).)))))))))))))))))
)))))).))).))))))))))........
SIMILARITIES
miRBase
osa-MIR806c
:
1e-36
PMRD
osa-miR806c
:
1e-36
microPC
miR806
:
0.0000002
UniProt
no hits
RFAM
MIR806: 1e-46
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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