miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST004387
species: Oryza sativa
miRNA family: MIR812
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAATAAGATGAATGGTCAA

miRNA*
 GACCGTTTGTCTTATTAAAAAAA

mismatches: 1
bulges: 2
View larger
pre-miRNA
 AATAGTAACTACTCCCTCCGTTTAAAAATATTTGACACCGTTGACTTTTTAGCACATGTTTGACCGTTTGTCTTATTAAAAAAAAATTGTGAAATATGTA
AAACTATATGTGTACATAAAAGTATATTTAACGATGAATCAAATGATATGAAAAGAATAAATAATTACTTAAATTTTTTGAATAAGATGAATGGTCAAAC
ATGTACTAAAAAATCAACGGTGTCAAACATTTTGAAACGGAGGTAGTATAAAAGAT

dot-bracket secondary structure
.........((((.(((((((((.(((((.((((((((((((((.(((((((.((((((((((((((((((((((((...(((((((((((..(((((((
....))))))).))))...(((((((((((....((.(((....))).)).......))))))..)))))..))))))).))))))))))))))))))))
)))).))))))).)))))))))))))).))))).))))))))).))))........


SIMILARITIES
miRBase osa-MIR806d: 2e-78

PMRD osa-miR806d: 2e-78

microPC miR806: 8e-41		UniProt no hits

RFAM MIR806: 9e-72		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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