miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST004397
species:
Oryza sativa
miRNA family:
MIR2123
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAAAAAGTCAACGGCGTCAAA
miRNA*
TGACGCCGTTGACTTTTTTTA
mismatches:
0
bulges:
0
View larger
pre-miRNA
CATATCTAATACTCCCTCCATCTCAAAATGTT
TGACGCCGTTGACTTTTTTTA
AAAAAATTTGACCGTTTGTCTTATTCAAAAAATTTAAGTAATTATTA
ATTCTTTTCCTATCATTTGATTTATTGTTAACTATACTTTTATGTCTATATAGTTTTACATATTTCACAACAGTTTTTGAACCAAACGAACGGTTAAACA
TGTTT
AAAAAAGTCAACGGCGTCAAA
TATTTAAGGATGGAGGGAGTACTAAATTC
dot-bracket secondary structure
......((.((((((((((((((..(((((((
(((((((((((((((((((.(
(.....(((((((((((((....((((((((.(((((....)))..(
((............)))(((.....(((.(((((((............)))))))..)))....))).))...))))))))....)))))))))))))..
..)).
)))))))))))))))))))))
)))))..)))))))))))))).)).....
SIMILARITIES
miRBase
osa-MIR806e
:
3e-46
PMRD
oru-miR806
:
1e-51
microPC
miR806
:
5e-39
UniProt
no hits
RFAM
MIR806: 4e-80
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record