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ABOUT THIS RECORD

ID: MNEST004400
species: Oryza sativa
miRNA family: MIR1884
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGACGCCGTTGACTTTTTT

miRNA*
 AAAAGTCAACGATGTCAAACA

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TACTACCTTCATTCTAAAATGTTTGACGCCGTTGACTTTTTTCAAAAATATTTGATCGTTCGTCTTATTTAAAAAATTTAAGTAATTGTTAATTTTTTTT
CTATCATTTGATTTATTGTTAAATATACTTTTATGTATACATATAGTTTTACACATATCACAAAAGTTTTTGAATAAAACGAACAAACATGTTTAAAAAA
GTCAACGATGTCAAACATTTAGGGAATGAGGAAAT

dot-bracket secondary structure
......(((((((((.((((((((((((.(((((((((((((.((..((.(((....((((((.(((((((((((.((((((((....(((((.......
..(((....))).....)))))...))))).(((((.((..........)).))))).....))).))))))))))).))))))))).)).)).))))))
))))))).))))))))))))..)))))))))....


SIMILARITIES
miRBase osa-MIR806h: 5e-39

PMRD oru-miR806: 8e-47

microPC miR806: 1e-24		UniProt no hits

RFAM MIR806: 5e-107		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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