ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGAGG mismatches: 3 bulges: 0 |
pre-miRNA
TCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCC
CCTCAAGTAA
dot-bracket secondary structure
....(((((((((((((..((((((.(((((((.((.........(((((...(((((....)))))..)))))..))))))))).))))))..))))))
)))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
TCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCC
CCTCAAGTAA
dot-bracket secondary structure
....(((((((((((((..((((((.(((((((.((.........(((((...(((((....)))))..)))))..))))))))).))))))..))))))
)))))))...
SIMILARITIES| miRBase osa-MIR166d: 6e-58 PMRD osa-miR166d: 6e-58 microPC miR166: 6e-49 | UniProt no hits RFAM mir-166: 2e-52 | most similar mature miRNAs |
Identical with: miR166 from microPC (MNEST046452) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
