ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf647
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGAGATGACGTGGACGAATA miRNA* TTTATCCATGTCACCTAGAGT mismatches: 4 bulges: 0 |
pre-miRNA
GAGATTTATCCATGTCACCTAGAGTGGCAGTAAAAAAAATTTCATGAATAACTCTCAGATTTAACCATGGGTTAAAAATTTTATTCGAGATGACGTGGAC
GAATAC
dot-bracket secondary structure
...((((.(((((((((.((.((((((.............((((((..(((.((...)).)))..)))))).........)))))).)).))))))))).
))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GAGATTTATCCATGTCACCTAGAGTGGCAGTAAAAAAAATTTCATGAATAACTCTCAGATTTAACCATGGGTTAAAAATTTTATTCGAGATGACGTGGAC
GAATAC
dot-bracket secondary structure
...((((.(((((((((.((.((((((.............((((((..(((.((...)).)))..)))))).........)))))).)).))))))))).
))))..
SIMILARITIES| miRBase osa-MIR2862: 0.0003 PMRD osa-miR2862: 0.0003 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
