ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: miR160d
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTGCGAGGAGCCAAGCATG miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 0 |
pre-miRNA
GAGAGGGGAAAAAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGC
ATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTCTCTCTGTCTCT
dot-bracket secondary structure
((((((((.......((...(((((.(((((((.(((((((((.((((((((..(((((((.....((((((((.(((((((((.....))))...))))
))))).))))...))))))).)))).)))).))))))))).))))))).))))).)).)))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
GAGAGGGGAAAAAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGC
ATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTCTCTCTGTCTCT
dot-bracket secondary structure
((((((((.......((...(((((.(((((((.(((((((((.((((((((..(((((((.....((((((((.(((((((((.....))))...))))
))))).))))...))))))).)))).)))).))))))))).))))))).))))).)).)))))))).......
SIMILARITIES| miRBase osa-MIR160d: 8e-77 PMRD osa-miR160d: 8e-77 microPC miR160: 1e-69 | UniProt no hits RFAM mir-160: 6e-72 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST045467) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
