ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCG miRNA* GCGTGCGAGGTGCCAAGCATG mismatches: 3 bulges: 0 |
pre-miRNA
GATTGTGAAGGGGATGAAAAGGTAGGGGATATGCCTGGCTCCCTGTATGCCGCTCGCATGGCTGCCAACCCAATGAACTCGATCTCGTTGTTGGCCGCTG
CGTACGGCGTGCGAGGTGCCAAGCATGGCCCTCTTCCCTTCTCTCTTTCTCTCTC
dot-bracket secondary structure
......((((((((.(((..((.(((((.(((((.((((.((.(((((((((..(((..(((.((((((..(((((........))))))))))).))))
))..))))))))).)).)))).)))))..))))).)).)))))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
GATTGTGAAGGGGATGAAAAGGTAGGGGATATGCCTGGCTCCCTGTATGCCGCTCGCATGGCTGCCAACCCAATGAACTCGATCTCGTTGTTGGCCGCTG
CGTACGGCGTGCGAGGTGCCAAGCATGGCCCTCTTCCCTTCTCTCTTTCTCTCTC
dot-bracket secondary structure
......((((((((.(((..((.(((((.(((((.((((.((.(((((((((..(((..(((.((((((..(((((........))))))))))).))))
))..))))))))).)).)))).)))))..))))).)).)))))))))))......
SIMILARITIES| miRBase osa-MIR160e: 4e-60 PMRD osa-miR160e: 4e-60 microPC miR160: 0.000000000002 | UniProt no hits RFAM mir-160: 2e-50 | most similar mature miRNAs |
Identical with: osa-miR160e from PMRD (MNEST048830) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
