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ABOUT THIS RECORD
ID:
MNEST004531
species:
Oryza sativa
miRNA family:
MIR444
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGCTGCCTCAAGCTTGCTGC
miRNA*
AGCAAGCTAGAGGTGGCAACT
mismatches:
1
bulges:
0
View larger
pre-miRNA
AGATATGCAATTGGGGGC
AGCAAGCTAGAGGTGGCAACT
GCATAATTTGCAAGAAATTGTTGGCTGAAGATCATACCGATGATATTCTTGCAAGTTATGC
AG
TTGCTGCCTCAAGCTTGCTGC
CTCCTGTTGCCAAAG
dot-bracket secondary structure
......(((((.((((((
((((((((.((((((((((((
((((((((((((((((((((((((.(((...)))..)))))))).))))))))))))))))
))
)))))))))).))))))))))
)))).))))).....
SIMILARITIES
miRBase
osa-MIR444a
:
2e-70
PMRD
tae-miR444
:
3e-17
microPC
miR444
:
0.00000000000003
UniProt
sp|Q6VAM4|MAD23_ORYSJ: 0.00001
RFAM
MIR444: 7e-68
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
Source sequences
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