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ABOUT THIS RECORD

ID: MNEST004533
species: Oryza sativa
miRNA family: MIR444
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGCTGCCTCAAGCTTGCTGC

miRNA*
 ACCAAGCATGAGGCAACAACT

mismatches: 3
bulges: 0
View larger
pre-miRNA
 GTTATTGCACATGGTGGCACCAAGCATGAGGCAACAACTGCATTACTTGCAAGAAAGGCACAAAATCATTAGATGATTACTTGTGGCTTTCTTGCAAGTT
GTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTCTGCCAAAT

dot-bracket secondary structure
......(((...((.((((.(((((.(((((((.(((((((((.(((((((((((((.(((((((((((...))))))..))))).))))))))))))).
))))))))).))))))).))))).))))..))..))).....


SIMILARITIES
miRBase osa-MIR444d: 7e-77

PMRD tae-miR444: 9e-24

microPC miR444: 2e-58		UniProt sp|Q6Z6W2|MAD57_ORYSJ: 0.00004

RFAM MIR444: 7e-28		most similar mature miRNAs

Identical with: miR444 from microPC (MNEST045665)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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