ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTGCCTCAAGCTTGCTGCC miRNA* CACCAAGCATGAGGTTACAAC mismatches: 3 bulges: 0 |
pre-miRNA
TCGAGTTATTGCATATGGTGGCACCAAGCATGAGGTTACAACTGCATTACTTGCAAGGGAATCACAAGTCACAAGAAACACATGTTATTACAATGGATAA
TCAATGGGTCATCATACTATGACTTTCTTGCAAGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCGTCTGTCAGAACTGC
dot-bracket secondary structure
...((((...(((.((((.((((.(((((.((((((.((((((((((.((((((((((((.(((..(((.....((....(((((((((......)))))
)..)))..)).....))).))).)))))))))))).)))))))))).)))))).))))).)))).)))).)))...))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCGAGTTATTGCATATGGTGGCACCAAGCATGAGGTTACAACTGCATTACTTGCAAGGGAATCACAAGTCACAAGAAACACATGTTATTACAATGGATAA
TCAATGGGTCATCATACTATGACTTTCTTGCAAGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCGTCTGTCAGAACTGC
dot-bracket secondary structure
...((((...(((.((((.((((.(((((.((((((.((((((((((.((((((((((((.(((..(((.....((....(((((((((......)))))
)..)))..)).....))).))).)))))))))))).)))))))))).)))))).))))).)))).)))).)))...))))..
SIMILARITIES| miRBase osa-MIR444f: 6e-84 PMRD oru-miR444: 2e-90 microPC miR444: 2e-71 | UniProt no hits RFAM MIR444: 3e-89 | most similar mature miRNAs |
Identical with: osa-miR444f from PMRD (MNEST049007) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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