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ABOUT THIS RECORD
ID:
MNEST004539
species:
Oryza sativa
miRNA family:
MIR166
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCC
miRNA*
AATGTTGTCTGGTTCAAGG
mismatches:
3
bulges:
0
View larger
pre-miRNA
TTGATAGTATGAAGCTATTTGCTTCTGAGTGG
AATGTTGTCTGGTTCAAGG
TCTCATACACCTTGTGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATT
CCTCTCATCCGTGGGATC
TCGGACCAGGCTTCATTCC
CCTCAGAGATAGCTTCAAAACATTAGATC
dot-bracket secondary structure
.........((((((((((....((((((.((
((((..(((((((((.(((
(((((.(((...)))((....((((((((.((......))....))).)
))))....)).)))))))
).)))))))))..))))))
.))))))))))))))))............
SIMILARITIES
miRBase
osa-MIR166a
:
8e-74
PMRD
osa-miR166a
:
8e-74
microPC
miR166
:
4e-54
UniProt
no hits
RFAM
mir-166: 5e-63
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record
deep sequencing data evidence