ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: miR166d
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGTCTGGTTCAAGG miRNA* TCGGACCAGGCTTCATTCCCC mismatches: 3 bulges: 0 |
pre-miRNA
ATTGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATACACCTTGTGGTTTTGAGGATGATTTGTGCAAGGTTTTTCAT
TCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCT
dot-bracket secondary structure
..........((((((((((....((((((.((((((..(((((((((.((((((((.(((...)))((....((((((((.((......))....))).
)))))....)).)))))))).)))))))))..)))))).)))))))))))))))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
ATTGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATACACCTTGTGGTTTTGAGGATGATTTGTGCAAGGTTTTTCAT
TCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCT
dot-bracket secondary structure
..........((((((((((....((((((.((((((..(((((((((.((((((((.(((...)))((....((((((((.((......))....))).
)))))....)).)))))))).)))))))))..)))))).)))))))))))))))).............
SIMILARITIES| miRBase osa-MIR166a: 8e-74 PMRD osa-miR166a: 8e-74 microPC miR166: 4e-54 | UniProt no hits RFAM mir-166: 5e-63 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
