ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: miR166d
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGATTGTTGTCTGGTTCAAGG miRNA* TCGGACCAGGCTTCAATCCCT mismatches: 3 bulges: 0 |
pre-miRNA
TCCAGGCTGAAGTTAGGTTAAGGGGATTGTTGTCTGGTTCAAGGTCTCCACATTGTGCAAAATGTTCATTCATGGAGGCACAGGATGCTTGGTGATCTCG
GACCAGGCTTCAATCCCTTTAACCAGCATCTGCACAAT
dot-bracket secondary structure
.....((.((.(((.((((((((((((((..(((((((((.(((((.(((..((((((...(((......)))....))))))......))).))))).)
))))))))..))))))))))))))))).)).)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCCAGGCTGAAGTTAGGTTAAGGGGATTGTTGTCTGGTTCAAGGTCTCCACATTGTGCAAAATGTTCATTCATGGAGGCACAGGATGCTTGGTGATCTCG
GACCAGGCTTCAATCCCTTTAACCAGCATCTGCACAAT
dot-bracket secondary structure
.....((.((.(((.((((((((((((((..(((((((((.(((((.(((..((((((...(((......)))....))))))......))).))))).)
))))))))..))))))))))))))))).)).)).....
SIMILARITIES| miRBase osa-MIR166l: 5e-62 PMRD osa-miR166l: 5e-62 microPC miR166: 5e-50 | UniProt no hits RFAM mir-166: 9e-55 | most similar mature miRNAs |
Identical with: miR166 from microPC (MNEST045063) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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