ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCAATCCCT miRNA* GGATTGTTGTCTGGTTCAAGG mismatches: 3 bulges: 0 |
pre-miRNA
CCAGGCTGAAGTTAGGTTAAGGGGATTGTTGTCTGGTTCAAGGTCTCCACATTGTGCAAAATGTTCATTCATGGAGGCACAGGATGCTTGGTGATCTCGG
ACCAGGCTTCAATCCCTTTAACCAGCATCTGCACAA
dot-bracket secondary structure
....((.((.(((.((((((((((((((..(((((((((.(((((.(((..((((((...(((......)))....))))))......))).))))).))
)))))))..))))))))))))))))).)).))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
CCAGGCTGAAGTTAGGTTAAGGGGATTGTTGTCTGGTTCAAGGTCTCCACATTGTGCAAAATGTTCATTCATGGAGGCACAGGATGCTTGGTGATCTCGG
ACCAGGCTTCAATCCCTTTAACCAGCATCTGCACAA
dot-bracket secondary structure
....((.((.(((.((((((((((((((..(((((((((.(((((.(((..((((((...(((......)))....))))))......))).))))).))
)))))))..))))))))))))))))).)).))....
SIMILARITIES| miRBase osa-MIR166l: 5e-62 PMRD osa-miR166l: 5e-62 microPC miR166: 5e-50 | UniProt no hits RFAM mir-166: 9e-55 | most similar mature miRNAs |
Identical with: miR166 from microPC (MNEST045063) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
