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ABOUT THIS RECORD
ID:
MNEST004568
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AATGACTTACCTTGTGAAATG
miRNA*
TTTCACACATGTAAGTCATTCT
mismatches:
2
bulges:
1
View larger
pre-miRNA
ACTGAATGAAGTACTCCCTCCG
TTTCACACATGTAAGTCATTCT
AGCATTTCCCACATTCATATTGATGCTAATGAATCTAGATAGATATAG
AATGACTT
ACCTTGTGAAATG
GAGGAAGTAAGAAAAGATG
dot-bracket secondary structure
...........((((.((((((
(((((((...((((((((((((
((((((...............))))))).((.((((....)))).)))
))))))))
))..)))))))))
)))).))))..........
SIMILARITIES
miRBase
osa-MIR809d
:
1e-28
PMRD
osa-miR809d
:
1e-28
microPC
miR809
:
5e-16
UniProt
no hits
RFAM
MIR1122: 2e-31
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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