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ABOUT THIS RECORD
ID:
MNEST004569
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AATGACTTACCTTGTGAAATG
miRNA*
GTTCACCAAGTAAGTCATTCT
mismatches:
4
bulges:
0
View larger
pre-miRNA
ACTGAATGAAGTACTCCCTCCG
GTTCACCAAGTAAGTCATTCT
AGCATTTCCCACAGTTCATATTGATGCTAATGAATCTAGATAGATATAG
AATGACTT
ACCTTGTGAAATG
GAGGAAGTAAGAAAGATGC
dot-bracket secondary structure
...........((((.((((((
.(((((...((((((((((((
((((((................))))))).((.((((....)))).)))
))))))))
))...))))).))
)))).))))..........
SIMILARITIES
miRBase
osa-MIR809d
:
2e-21
PMRD
osa-miR809d
:
2e-21
microPC
miR809
:
0.000000000007
UniProt
no hits
RFAM
MIR1122: 2e-24
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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