ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATGACTTACATTGTGAAACG miRNA* ATTTCACAATATAAATCATTCT mismatches: 3 bulges: 0 |
pre-miRNA
TGCTTCCAAACACTACTCCCTCCATTTCACAATATAAATCATTCTAGCATTTTCCATAAAATGACTTACATTGTGAAACGAAGGAAGTATTTAGTCTTCA
dot-bracket secondary structure
.......(((.(((..(((.((..(((((((((.(((.(((((.((..........)).))))).))).))))))))).)).)))))).)))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TGCTTCCAAACACTACTCCCTCCATTTCACAATATAAATCATTCTAGCATTTTCCATAAAATGACTTACATTGTGAAACGAAGGAAGTATTTAGTCTTCA
dot-bracket secondary structure
.......(((.(((..(((.((..(((((((((.(((.(((((.((..........)).))))).))).))))))))).)).)))))).)))........
SIMILARITIES| miRBase osa-MIR809c: 0.000000000005 PMRD osa-miRf10855-akr: 0.00000000000008 microPC no hits | UniProt no hits RFAM MIR1122: 0.0000000000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
