ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATGACTTACATTGTGAAACG miRNA* TCATAATGATAAATTGTAG mismatches: 3 bulges: 2 |
pre-miRNA
AGCTCGGATTTGATTTCTAGTGTAGCTAATGACTTACATTGTGAAACGGAGGAAGTACTTATATTCAACTTGTCATGTACTTTTTGATAGCACCTTTCTT
CAGTGTTCATTTGTTTTCAGGGTTTAAACCGATCTCTGACAATGAAACTATTTTTTTCATCCTTCATAATGATAAATTGTAGCTATTTACAAGAGGAATC
AGATTA
dot-bracket secondary structure
......((((((((((((.(((((((((.(((.((((((((((((..(((.((((.....(((((((..((((((((.((....(((..((((.......
..)))))))...))...))(((((......))))).))))))))))..)))...)))).)))))))))))).))).))))))))))..))...)))))))
))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGCTCGGATTTGATTTCTAGTGTAGCTAATGACTTACATTGTGAAACGGAGGAAGTACTTATATTCAACTTGTCATGTACTTTTTGATAGCACCTTTCTT
CAGTGTTCATTTGTTTTCAGGGTTTAAACCGATCTCTGACAATGAAACTATTTTTTTCATCCTTCATAATGATAAATTGTAGCTATTTACAAGAGGAATC
AGATTA
dot-bracket secondary structure
......((((((((((((.(((((((((.(((.((((((((((((..(((.((((.....(((((((..((((((((.((....(((..((((.......
..)))))))...))...))(((((......))))).))))))))))..)))...)))).)))))))))))).))).))))))))))..))...)))))))
))))).
SIMILARITIES| miRBase osa-MIR809d: 0.0000000007 PMRD osa-miRf10805-akr: 0.0000000002 microPC no hits | UniProt no hits RFAM MIR1122: 0.00000000005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
