ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGACTTACATTGTGAAACGG miRNA* GTTTTACAATGTAAGTCATCT mismatches: 0 bulges: 0 |
pre-miRNA
TACTCCCTCCGTTTTACAATGTAAGTCATCTAGCATTTCTCATATTCATATTGATGCTAATAAATCTAAACATATATACTTATTTAGATTCATTAGCATC
AATATAAATGTGGAAAATGTTAGAATGACTTACATTGTGAAACGGATGATTA
dot-bracket secondary structure
.......(((((((((((((((((((((((((((((((.(((((((.((((((((((((((.((((((((............)))))))).)))))))))
))))).))))))).))))))))).))))))))))))))))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACTCCCTCCGTTTTACAATGTAAGTCATCTAGCATTTCTCATATTCATATTGATGCTAATAAATCTAAACATATATACTTATTTAGATTCATTAGCATC
AATATAAATGTGGAAAATGTTAGAATGACTTACATTGTGAAACGGATGATTA
dot-bracket secondary structure
.......(((((((((((((((((((((((((((((((.(((((((.((((((((((((((.((((((((............)))))))).)))))))))
))))).))))))).))))))))).))))))))))))))))))))))......
SIMILARITIES| miRBase osa-MIR809g: 2e-43 PMRD osa-miR809g: 2e-43 microPC miR809: 1e-19 | UniProt no hits RFAM MIR1122: 4e-45 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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