ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACATTGTGAAACGGAGGGA miRNA* CCCTCGTTTCATAATGTAATA mismatches: 1 bulges: 0 |
pre-miRNA
GGTACATATATACAGTACTTCCCTCGTTTCATAATGTAATACTTTCTACCATTAACATTTATATGTATGTGGGCAATGGTAAAAAGTCTTACATTGTGAA
ACGGAGGGAGTAATGTTTATGTTTTT
dot-bracket secondary structure
...(((((...(((.(((((((.((((((((((((((((.(((((.(((((((.((((........))))....))))))).))))).))))))))))))
)))).))))))).))).)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GGTACATATATACAGTACTTCCCTCGTTTCATAATGTAATACTTTCTACCATTAACATTTATATGTATGTGGGCAATGGTAAAAAGTCTTACATTGTGAA
ACGGAGGGAGTAATGTTTATGTTTTT
dot-bracket secondary structure
...(((((...(((.(((((((.((((((((((((((((.(((((.(((((((.((((........))))....))))))).))))).))))))))))))
)))).))))))).))).)))))....
SIMILARITIES| miRBase osa-MIR809d: 0.0000000001 PMRD osa-miRf10787-akr: 4e-16 microPC miR1436: 0.000000000000007 | UniProt no hits RFAM MIR1122: 2e-21 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
