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ABOUT THIS RECORD
ID:
MNEST004602
species:
Oryza sativa
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTTCCTAGCATTGCCCACATT
miRNA*
TGTGGACAATGCCAGAAAGTC
mismatches:
4
bulges:
0
View larger
pre-miRNA
TGTATAATTATTTTGTACTTCCTCTGTTTCACAATGTAAGA
CTTCCTAGCATTGCCCACATT
CATTTAGATGGTAATGAATCTAGATATATGTATGTGTT
TAGATCCATTAACATCTATATTTA
TGTGGACAATGCCAGAAAGTC
TTACATTGTGAAACGGAGGAAGTATGAACAAATATGTG
dot-bracket secondary structure
...........((((((((((((((((((((((((((((((
(((.((.((((((.((((((.
.((.((((((.(((((.(((((((((((....))))))
))))).))))).)))))).))..)
))))).)))))).)).)))))
))))))))))))))))))))))))))))..........
SIMILARITIES
miRBase
osa-MIR819e
:
5e-29
PMRD
osa-miR819e
:
5e-29
microPC
miR1120
:
1e-29
UniProt
no hits
RFAM
MIR1122: 2e-56
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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