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ABOUT THIS RECORD
ID:
MNEST004603
species:
Oryza sativa
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGTAAGTCATTCTAGCATTT
miRNA*
ATGCTAGAATCACTTACATTG
mismatches:
1
bulges:
0
View larger
pre-miRNA
TATAGATAGATACTACTCCCTCCGTTTCACA
ATGTAAGTCATTCTAGCATTT
CCCACATTCATATTGATATTAATAAATCTAGACATATATATCTATCTA
GATTCATTAACATTAATATGAATAGGGAAA
ATGCTAGAATCACTTACATTG
TGAAACGGAGGAAGTATTGTCCAGAGAA
dot-bracket secondary structure
........((((.((((.(((((((((((((
((((((((.((((((((((((
(((..((((((((((((.(((((.((((((((............))))
)))).))))).)))))))))))).))).))
)))))))))).))))))))))
))))))))))).)))).)))).......
SIMILARITIES
miRBase
osa-MIR808
:
3e-61
PMRD
osa-miR808
:
3e-61
microPC
miR809
:
2e-25
UniProt
sp|Q6K1U0|P2C17_ORYSJ: 0.0003
RFAM
MIR1122: 3e-61
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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