ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGTAAGTCATTCTAGCATTT miRNA* ATGCTAGAATGACTTACATTA mismatches: 0 bulges: 0 |
pre-miRNA
GTTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCATATTCATATTGATGTTAATGAATCTAGACTAGATTTATTAACATCAATATAAATG
TGAGAAATGCTAGAATGACTTACATTATGAAACGGAGGAAGTTC
dot-bracket secondary structure
...(((.(((((((((((.(((((((((((((((((((((((.((((((.(((((((((((((((((((((...))))))))))))))))))))).))))
)).))))))))))))))))))))))).))))))))))).)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCATATTCATATTGATGTTAATGAATCTAGACTAGATTTATTAACATCAATATAAATG
TGAGAAATGCTAGAATGACTTACATTATGAAACGGAGGAAGTTC
dot-bracket secondary structure
...(((.(((((((((((.(((((((((((((((((((((((.((((((.(((((((((((((((((((((...))))))))))))))))))))).))))
)).))))))))))))))))))))))).))))))))))).)))..
SIMILARITIES| miRBase osa-MIR809d: 7e-43 PMRD osa-miR809d: 7e-43 microPC miR809: 5e-44 | UniProt sp|Q6K1U0|P2C17_ORYSJ: 0.0002 RFAM MIR1122: 8e-77 | most similar mature miRNAs |
Identical with: miR809 from microPC (MNEST046060) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
