ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1425
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGATTCAATCCTTGCTGCT miRNA* CAGCAAGAACTGGATCTTAAT mismatches: 3 bulges: 0 |
pre-miRNA
GAAGGAAGATTGCTCCACCTGTTGACTGCATTAGGATTCAATCCTTGCTGCTAAATGTATTGCTTATATTCAGCAATATAATGTTCAGCAGCAAGAACTG
GATCTTAATATAGTCGATAGTGGAAGAACGGTAACAT
dot-bracket secondary structure
.............(((((.(((((((((.(((((((((((...(((((((((.(((((((((((.......))))))))...))).)))))))))...))
))))))))).)))))))))))))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
GAAGGAAGATTGCTCCACCTGTTGACTGCATTAGGATTCAATCCTTGCTGCTAAATGTATTGCTTATATTCAGCAATATAATGTTCAGCAGCAAGAACTG
GATCTTAATATAGTCGATAGTGGAAGAACGGTAACAT
dot-bracket secondary structure
.............(((((.(((((((((.(((((((((((...(((((((((.(((((((((((.......))))))))...))).)))))))))...))
))))))))).)))))))))))))).............
SIMILARITIES| miRBase osa-MIR1425: 5e-53 PMRD osa-miR1425: 5e-53 microPC miR1425: 2e-37 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR1425 from microPC (MNEST046793) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
