miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST004622
species: Oryza sativa
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGTGGGACAGAGGGAGTAGA

miRNA*
 TACTCCCTCCGTCTCATAATA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 ATGTACTCCCTCCGTCTCATAATATAAGGGATTTTAAGTTTTTGCTTGTAACGTTTGACCCACTCGTCTTATTCAAATTTTTTTGAAATTATTAATTATT
TTATTTGTGACTTACTTTATTATCTAAAATACTTTAAGCATAACTTTTCATTTTTTATATTTGCAAAAAAAATTTGAATAAGACTAGTGGTCAAACGTTA
CATGTAAAAAATCAAAATACCTTATATTGTGGGACAGAGGGAGTAGA

dot-bracket secondary structure
...(((((((((.((((((((((((((((.(((((...(((((((.((((((((((((((.(((.(((((((((((((((((((..((.(((.((.....
....(((((.((((...((((......))))...)))))))))..........)).))).))...))))))))))))))))))).)))))))))))))))
)).)))))))...))))).)))))))))))))))).)))))))))..


SIMILARITIES
miRBase osa-MIR818e: 4e-18

PMRD osa-miRf11994-akr: 3e-31

microPC miR818: 2e-16		UniProt no hits

RFAM MIR806: 5e-70		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;