ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCTCCCTCCGTCCCTAAATA miRNA* TTTTGGGACGGAGGGAGTAGA mismatches: 1 bulges: 0 |
pre-miRNA
GTTAAATGCTCCCTCCGTCCCTAAATATAAGAGATTTTGGTTGGATGTGACGTATTCTAGTACTGTGAATCTAGATAGGAGCATGTCCAAATTCGTAGTA
TTAGGATACATCCCATTTACCCAAAATCCCTTATATTTTGGGACGGAGGGAGTAGATGT
dot-bracket secondary structure
......(((((((((((((((.(((((((((.((((((((.((((((.((.(((((((((((((((((((...((((......))))...))))))))))
))))))))).)).)))))).)))))))).))))))))).))))))))))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTAAATGCTCCCTCCGTCCCTAAATATAAGAGATTTTGGTTGGATGTGACGTATTCTAGTACTGTGAATCTAGATAGGAGCATGTCCAAATTCGTAGTA
TTAGGATACATCCCATTTACCCAAAATCCCTTATATTTTGGGACGGAGGGAGTAGATGT
dot-bracket secondary structure
......(((((((((((((((.(((((((((.((((((((.((((((.((.(((((((((((((((((((...((((......))))...))))))))))
))))))))).)).)))))).)))))))).))))))))).))))))))))))))).....
SIMILARITIES| miRBase osa-MIR818d: 0.000000008 PMRD osa-miRf10497-akr: 0.000000000000002 microPC miR818: 7e-71 | UniProt no hits RFAM MIR1122: 6e-84 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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