ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCCGTCCCTAAATATAACAA miRNA* CTTATATTTTGGGACGGAGGG mismatches: 4 bulges: 0 |
pre-miRNA
TGTTTGGCAATTAACTACTACCTCCGTCCCTAAATATAACAACTTTTGGCTATGAATCTGAACGCACAGTTATCCAGATTCATAGCTAAAAATACTTATA
TTTTGGGACGGAGGGAGTACTAGTAGTAGATTA
dot-bracket secondary structure
........((((.(((((((((((((((((.((((((((....((((((((((((((((((((.....)))...)))))))))))))))))....)))))
))).))))))))))......))))))).)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTTTGGCAATTAACTACTACCTCCGTCCCTAAATATAACAACTTTTGGCTATGAATCTGAACGCACAGTTATCCAGATTCATAGCTAAAAATACTTATA
TTTTGGGACGGAGGGAGTACTAGTAGTAGATTA
dot-bracket secondary structure
........((((.(((((((((((((((((.((((((((....((((((((((((((((((((.....)))...)))))))))))))))))....)))))
))).))))))))))......))))))).)))).
SIMILARITIES| miRBase osa-MIR1439: 0.000000007 PMRD osa-miRf10603-akr: 0.00000000003 microPC miR1439: 0.0000004 | UniProt no hits RFAM MIR1122: 2e-55 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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