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ABOUT THIS RECORD
ID:
MNEST004638
species:
Oryza sativa
miRNA family:
MIRf162
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGGTTTCCGTGTCCAACGTT
miRNA*
TGTTGGAGATAGAAACCCACA
mismatches:
3
bulges:
0
View larger
pre-miRNA
AGACTACTCCCTCCATCCCATTGTAAGTGTAGTTG
TGGGTTTCCGTGTCCAACGTT
TGACCGTCCGTCTTATTTGAAACAATTATGAATTTTTTTTAAAA
AATAAGTCAGGCATAAAGTACTATTCATGTTTTATCATCTAATAACAATATAAAAATACAAATCATAAAAAAAATTTAAATAAGACGGACGGCTAAT
TGT
TGGAGATAGAAACCCACA
ATTGCACTTAAAATGGGACCGAGGGCATAATG
dot-bracket secondary structure
........(((((..(((((((.((((((((((((
((((((((.((.(((((((.(
((.((((((((((((((((((....((((((.((.((((((...
.....((.((((((.((......)).)))))).))...............))))))...)).))))))......)))))))))))))))))).))).
)))
)))).)).))))))))))
)))))))))).)))))))..))))).......
SIMILARITIES
miRBase
osa-MIR812a
:
2e-23
PMRD
osa-miR812a
:
2e-23
microPC
miR812
:
0.00000000000001
UniProt
no hits
RFAM
MIR812: 2e-66
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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