miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST004641
species: Oryza sativa
miRNA family: MIRf162
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGGTTTCCGTGTCCAATGTT

miRNA*
 CGTTGGATACGGAAACCTAAG

mismatches: 0
bulges: 0
View larger
pre-miRNA
 AAGATAAACCCTGGGTTTCCGTGTCCAATGTTGGACCGTCCGTCTTATTTAAAAAAATAATGAAAAAAAGTAAAAAGATAAGTTACGCATAAAGTATTAA
TCATGTTTTATCATCTAACAATAATAAAAATACTAATTATAAAAAAAATTTATATAAGATGGATAGTCAAACGTTGGATACGGAAACCTAAGTTTTTTTA


dot-bracket secondary structure
.(((.((((..(((((((((((((((((((((.(((.(((((((((((.((((...............((((....(((.(((.((.......))))).)
))...((((((.((......)).)))))).))))..............)))).))))))))))).))).))))))))))))))))))))).)))).))).



SIMILARITIES
miRBase osa-MIR812o: 3e-21

PMRD osa-miRf11409-akr: 2e-28

microPC miR812: 5e-17		UniProt no hits

RFAM MIR812: 2e-35		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;