ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: miR164g
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACGTGCTCCCCTTCTCCACC miRNA* TGGAGAAGCAGGGTACGTGCA mismatches: 3 bulges: 0 |
pre-miRNA
CTATCGATCTACAGTTGAGTAGGTTCTTGTTGGAGAAGCAGGGTACGTGCAAAATGCACACCGGTTGGTCGAGCTAATTAACAAGCTCTGACGACCATGG
TGATCGAATGCACGTGCTCCCCTTCTCCACCATGGCCTTCTCACCTTCTTCATCTTCA
dot-bracket secondary structure
.....((.....((.((((.(((((..((.((((((((..(((((((((((...((..(((((...(((((((((........)))))....)))).)))
))..))..)))))))))))..)))))))).)).))))).)))).))...)).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CTATCGATCTACAGTTGAGTAGGTTCTTGTTGGAGAAGCAGGGTACGTGCAAAATGCACACCGGTTGGTCGAGCTAATTAACAAGCTCTGACGACCATGG
TGATCGAATGCACGTGCTCCCCTTCTCCACCATGGCCTTCTCACCTTCTTCATCTTCA
dot-bracket secondary structure
.....((.....((.((((.(((((..((.((((((((..(((((((((((...((..(((((...(((((((((........)))))....)))).)))
))..))..)))))))))))..)))))))).)).))))).)))).))...)).......
SIMILARITIES| miRBase osa-MIR164c: 4e-63 PMRD osa-miR164c: 4e-63 microPC miR164: 3e-51 | UniProt no hits RFAM MIR164: 7e-62 | most similar mature miRNAs |
Identical with: miR164 from microPC (MNEST045884) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
