ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCTATATTTTGGGACGGAGG miRNA* TCTGTCCTAAAATATAGCAAC mismatches: 0 bulges: 0 |
pre-miRNA
AATACATACTCTCTGTCCTAAAATATAGCAACCTAGTATGTCCACATTCGTTATACTAGGATATGTCCCATCCAGTACTAGGTTGCTATATTTTGGGACG
GAGGGAGTACCT
dot-bracket secondary structure
........(((((((((((((((((((((((((((((((...((.((((.........)))).)).........))))))))))))))))))))))))))
))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AATACATACTCTCTGTCCTAAAATATAGCAACCTAGTATGTCCACATTCGTTATACTAGGATATGTCCCATCCAGTACTAGGTTGCTATATTTTGGGACG
GAGGGAGTACCT
dot-bracket secondary structure
........(((((((((((((((((((((((((((((((...((.((((.........)))).)).........))))))))))))))))))))))))))
))))).......
SIMILARITIES| miRBase osa-MIR1862b: 0.000000006 PMRD osa-miRf11780-akr: 3e-20 microPC miR1862: 5e-40 | UniProt no hits RFAM MIR1122: 3e-48 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
