ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTCTCTATCTGTCAGC mismatches: 1 bulges: 1 |
pre-miRNA
TGGGAGNTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCNATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGCCC
GTTC
dot-bracket secondary structure
((((....(((((((((((((((((((((.((((((....(((((((((((....))..))))))))))))))).))))))))))))).)))))))))))
)...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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TGGGAGNTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCNATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGCCC
GTTC
dot-bracket secondary structure
((((....(((((((((((((((((((((.((((((....(((((((((((....))..))))))))))))))).))))))))))))).)))))))))))
)...
SIMILARITIES| miRBase osa-MIR156b: 1e-43 PMRD osa-miR156b: 1e-43 microPC miR156: 2e-39 | UniProt no hits RFAM mir-156: 2e-39 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
