ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCGCTCCTCTTTCTGTCAGC mismatches: 1 bulges: 2 |
pre-miRNA
GCATATGAAAGGCGAGATTGTTGACAGAAGAGAGTGAGCACACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGCCCCCGCCGTGTGCTCGCTCCTCTT
TCTGTCAGCATCTCTCATCAGTCCCTC
dot-bracket secondary structure
..........((.((((.((((((((((((.((((((((((((((((.((((((..(((...))).....))).)))..))))))))))))))))...))
))))))))))..)))).))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GCATATGAAAGGCGAGATTGTTGACAGAAGAGAGTGAGCACACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGCCCCCGCCGTGTGCTCGCTCCTCTT
TCTGTCAGCATCTCTCATCAGTCCCTC
dot-bracket secondary structure
..........((.((((.((((((((((((.((((((((((((((((.((((((..(((...))).....))).)))..))))))))))))))))...))
))))))))))..)))).))........
SIMILARITIES| miRBase osa-MIR156j: 3e-63 PMRD osa-miR156j: 3e-63 microPC miR156: 2e-42 | UniProt no hits RFAM mir-156: 4e-41 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST044915) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
