ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf1229
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGAGTGAGCACACACGGTG miRNA* TGGCGTGCTCACTCTTTAT mismatches: 4 bulges: 1 |
pre-miRNA
GGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGAGCTTGGCGTGCTCACTCTTTATTTGGCAG
dot-bracket secondary structure
...(((.(((((((((((((((((...((..((..(((((((((((....).)))))))))))).))..))))))))))))).)))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGAGCTTGGCGTGCTCACTCTTTATTTGGCAG
dot-bracket secondary structure
...(((.(((((((((((((((((...((..((..(((((((((((....).)))))))))))).))..))))))))))))).)))).)))
SIMILARITIES| miRBase osa-MIR156b: 2e-35 PMRD osa-miRf10227-akr: 2e-35 microPC miR156: 6e-33 | UniProt no hits RFAM mir-156: 3e-32 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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