ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTCTCTATCTGTCAGC mismatches: 1 bulges: 1 |
pre-miRNA
GGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCA
GCCGTTCACCAT
dot-bracket secondary structure
.(((...(((((.(((((((((((((((((((((.((((((....(((((((((((....).)))))))))))))))).))))))))))))).)))))))
))).))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCA
GCCGTTCACCAT
dot-bracket secondary structure
.(((...(((((.(((((((((((((((((((((.((((((....(((((((((((....).)))))))))))))))).))))))))))))).)))))))
))).))))))..
SIMILARITIES| miRBase osa-MIR156b: 4e-59 PMRD osa-miR156b: 4e-59 microPC miR156: 1e-43 | UniProt no hits RFAM mir-156: 2e-43 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST045399) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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